Design and physicochemical properties of new fluorescent ligands of protein kinase C isozymes focused on CH/pi interaction

Bioorg Med Chem. 2008 Jan 15;16(2):650-7. doi: 10.1016/j.bmc.2007.10.045. Epub 2007 Oct 22.

Abstract

Phorbol ester-type tumor promoters such as indolactam-V (IL-V, 1) bind to the C1 domains of protein kinase C (PKC) isozymes. A more convenient method to investigate the interaction between each tumor promoter and PKC C1 domain is needed. Focusing on our recent finding that the indole ring of IL-V is involved in the CH/pi interaction with Pro-11 of the PKCdelta-C1B domain, we developed new fluorescent probes (2-4) from IL-V by forming a pyrroloindazole ring. Compound 2 without a substituent at the pyrroloindazole ring bound most strongly to PKC C1 domains with a potency similar to IL-V, but its fluorescent intensity was the weakest of any of the probes. Although the binding affinity of 3 with a methyl group was significantly weaker than that of IL-V, 4 with a trifluoromethyl group showed moderate affinity and the most potent fluorescence intensity. The fluorescence intensity and emission maxima of 4 changed significantly when bound to the PKCdelta-C1B peptide in both the presence and absence of phosphatidylserine. These results suggest that 4 could be a useful probe for analyzing the interaction of tumor promoters with PKC C1 domains.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Fluorescent Dyes* / chemical synthesis
  • Fluorescent Dyes* / chemistry
  • Fluorescent Dyes* / pharmacokinetics
  • Fluorescent Dyes* / pharmacology
  • Isoenzymes / chemistry
  • Isoenzymes / metabolism
  • Lactams, Macrocyclic* / chemical synthesis
  • Lactams, Macrocyclic* / chemistry
  • Lactams, Macrocyclic* / pharmacokinetics
  • Lactams, Macrocyclic* / pharmacology
  • Ligands
  • Molecular Structure
  • Phorbol Esters* / chemical synthesis
  • Phorbol Esters* / chemistry
  • Phorbol Esters* / pharmacokinetics
  • Phorbol Esters* / pharmacology
  • Protein Kinase C / chemistry*
  • Protein Kinase C / metabolism*
  • Structure-Activity Relationship

Substances

  • Fluorescent Dyes
  • Isoenzymes
  • Lactams, Macrocyclic
  • Ligands
  • Phorbol Esters
  • Protein Kinase C